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Evolutionary Theory and Mathematics

    Title [click for details] Year *.pdf Citations [Google]
    (2024-4)
    [5414 total]     		Journal 2017 Impact Factor

  1. Evolution with recombination as Gibbs sampling ,
    Poulton, J., Altenberg, L., and Watkins, C.
    Theoretical Population Biology, online 2023.
    		2. 2023 [PDF] [1.613]

  2. The long and winding road to understanding organismal construction: Reply to comments on “From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics” ,
    Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
    Physics of Life Reviews 42: 19-24.
    		3. 2022 [PDF]

  3. From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics.
    Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
    Physics of Life Reviews, 42: 19-24. arXiv preprint arXiv:2002.00363.
    		4. 2021 [PDF] [61 Cites] [14.8]

  4. Addendum Needed on COVID-19 Travel Study [Extended Preprint]
    The Lancet Infectious Diseases Online First: September 15, 2021
    		5. 2021 [PDF] [1 Cite] [25.0]

  5. The Evolution of Imitation Without Cultural Transmission
    Lee Altenberg, Susanne Still, and Christopher J. Watkins
    https://arxiv.org/abs/2107.09761
    		6. 2021 [PDF]

  6. From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics.
    Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
    Physics of Life Reviews, online 21 May 2021. arXiv preprint arXiv:2002.00363.
    		7. 2021 [PDF] [35 Cites] [14.8]

  7. Nonconcavity of the Spectral Radius in Levinger's Theorem
    Lee Altenberg and Joel E. Cohen
    Linear Algebra and Its Applications 606: 201Ð218.
    		8. 2020 [PDF] [2 Cites] [0.973]

  8. The evolution of frequency-dependent cultural transmission
    Uri Liberman, Yoav Ram, Lee Altenberg, Marcus Feldman
    Theoretical Population Biology 132: 69-81.
    		9. 2020 [PDF] [5 Cites] [1.613]

  9. Developmental Structuring of Phenotypic Variation: A Case Study with a Cellular Automata Model of Ontogeny
    Wim Hordijk and Lee Altenberg
    Evolution & Development 22 (1-2): 20-34..
    Blog, “The Evolution of Robustness” online at The Extended Evolutionary Synthesis website.
    		10. 2020 [PDF] [5 Cites] [1.82]

  10. The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities
    Lehman, J., Clune, J., Misevic, D., Adami, C., Altenberg, L., et al..
    Artificial Life 26(2): 274-306
    		11. 2020 [PDF] [311 Cites] [1.608]

  11. An Extension of the Rayleigh Quotient to the Spectral Radius of Asymmetric Nonnegative Matrices.
    arXiv preprint arXiv:1912.12771. Under review.
    		12. 2019 [PDF]

  12. Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers
    Altenberg, L., N. Creanza, L. Fogarty, L. Hadany, et al.
    Theoretical Population Biology 129: 4-8.
    		13. 2019 [PDF] [1 Cites] [1.613]

  13. Thermodynamic Computing
    Tom Conte, Erik DeBenedictis, Natesh Ganesh, Todd Hylton, John Paul Strachan, R. Stanley Williams, Alexander Alemi, Lee Altenberg, Gavin Crooks, James Crutchfield, et al.
    A Computing Community Consortium (CCC) workshop report .
    		14. 2019 [PDF] [27 Cites]

  14. Physical Limitations of Work Extraction from Temporal Correlations
    Elan Stopnitzky, Susanne Still, Thomas E. Ouldridge, and Lee Altenberg
    Physical Review E 99(4): 042115; and also in The Energetics of Computing in Life and Machines, David H. Wolpert, et al., eds. Santa Fe Institute Press.
    		15. 2019 [PDF] [12 Cites] [2.353]

  15. Generation of variation and a modified mean fitness principle: Necessity is the mother of genetic invention ,
    Yoav Ram, Lee Altenberg, Uri Liberman, and Marcus W. Feldman
    Theoretical Population Biology 123: 1-8, https://doi.org/10.1016/j.tpb.2018.02.004
    		16. 2018 [PDF] [9 Cites] [1.613]

  16. Unified reduction principle for the evolution of mutation, migration, and recombination
    Lee Altenberg, Uri Liberman, and Marcus W. Feldman
    Proceedings of the National Academy of Sciences USA , online March 6, 2017.
    		17. 2017 [PDF] [47 Cites] [9.661]

  17. Probing the axioms of evolutionary algorithm design: Commentary on “On the mapping of genotype to phenotype in evolutionary algorithms” by Peter A. Whigham, Grant Dick, and James Maclaurin
    Genetic Programming and Evolvable Machines 18(3): 363-367
    		18. 2017 [PDF] [4 Cites] [1.514]

  18. Genetic Information, Mutation Rates, and the Lore of the Error Threshold
    Proceedings of the 9th International Conference on Bioinformatics and Computational Biology (BICOB 2017).
    		19. 2017 [PDF]

  19. Evolutionary Computation
    Elsevier Encyclopedia of Evolutionary Biology (2):40-47.
    		20. 2016 [PDF] [8 Cites]

  20. Norm Statement Considered Harmful: Comment on “Evolution of Unconditional Dispersal in Periodic Environments”
    Journal of Biological Dynamics 10 (1): 342-346.
    		21. 2016 [PDF] [1.279]

  21. Fundamental Properties of the Evolution of Mutational Robustness
    arXiv preprint arXiv:1508.07866
    		22. 2015 [PDF] [5 Cites]

  22. Statistical Problems in a Paper on Variation In Cancer Risk Among Tissues, and New Discoveries
    arXiv preprint arXiv:1006.3147
    		23. 2015 [PDF] [7 Cites]

  23. Evolvability and Robustness in Artificial Evolving Systems: Three Perturbations
    Genetic Programming and Evolvable Machines 15(3): 275-280
    		24. 2014 [PDF] [3 Cites] [1.514]

  24. Mathematics Awaits: Commentary on “Genetic Programming and Emergence” by Wolfgang Banzhaf
    Genetic Programming and Evolvable Machines 15(1): 87-89
    		25. 2014 [PDF] [3 Cites] [1.514]

  25. On the Ordering of Spectral Radius Product r(A) r(AD) Versus r(A2D) and Related Applications
    SIAM Journal on Matrix Analysis and Applications 34(3): 978-998
    		26. 2013 [PDF] [3 Cites] [2.194]

  26. A Sharpened Condition for Strict Log-Convexity of the Spectral Radius via the Bipartite Graph
    Linear Algebra and Its Applications 438: 3702-3718
    		27. 2013 [PDF] [8 Cites] [0.973]

  27. Implications of the Reduction Principle for Cosmological Natural Selection
    arXiv preprint arXiv:1302.1293
    		28. 2013 [PDF] [1 Cites]

  28. Social Insight Rings True 125 Years On
    Correspondence, Nature 490 (7421): 487
    		29. 2012 [HTML] [36.28]

  29. The Principle of Partial Control in Reaction-Diffusion Models for the Evolution of Dispersal
    		30. 2012 [PDF] [1 Cite]

  30. The Evolution of Dispersal in Random Environments and the Principle of Partial Control
    Ecological Monographs 82(3): 297-333
    		31. 2012 [PDF] [17 Cites] [8.759]

  31. Resolvent Positive Linear Operators Exhibit the Reduction Phenomenon
    Proceedings of the National Academy of Sciences USA 109 (10): 3705-3710
    		32. 2012 [PDF] [61 Cites] [9.661]

  32. An Evolutionary Reduction Principle for Mutation Rates at Multiple Loci
    Bulletin of Mathematical Biology 73: 1227-1270
    		33. 2011 [PDF] [19 Cites] [1.263]

  33. Proof of the Feldman-Karlin Conjecture on the Maximum Number of Equilibria in an Evolutionary System
    Theoretical Population Biology 77: 263-269
    		34. 2010 [PDF] [11 Cites] [1.613]

  34. Karlin Theory On Growth and Mixing Extended to Linear Differential Equations
    arXiv preprint arXiv:1006.3147
    		35. 2010 [PDF] [6 Cites]

  35. The Evolutionary Reduction Principle for Linear Variation in Genetic Transmission
    Bulletin of Mathematical Biology 71 (5): 1264-1284
    		36. 2009 [PDF] [16 Cites] [1.263]

  36. The Doctoral Advisor Genealogy of Samuel Karlin, Marcus W. Feldman, and Students
    		37. 2007 [PDF]

  37. Evolvability Suppression to Stabilize Far-Sighted Adaptations
    Artificial Life 11 (4): 427-443
    		38. 2005 [PDF] [24 Cites] [1.316]

  38. Modularity in Evolution: Some Low-Level Questions
    In Modularity: Understanding the Development and Evolution of Complex Natural Systems, Diego Rasskin-Gutman and Werner Callebaut, editors. MIT Press
    		39. 2005 [PDF] [77 Cites]

  39. Simon-Ando Decomposability and Fitness Landscapes,
    M. Shpak, P. Stadler, G. P.Wagner, and L. Altenberg
    Theory in Biosciences 123: 139-180
    		40. 2004 [PDF] [16 Cites] [0.778]

  40. Open Problems in the Spectral Analysis of Evolutionary Dynamics
    Pages 73-99 in Frontiers of Evolutionary Computation, ed. Anil Menon, Genetic Algorithms And Evolutionary Computation Series Vol. 11, Kluwer Academic Publishers, Boston
    		41. 2004 [PDF] [11 Cites]

  41. No sign of “dying genome” [Letter to Science, unpublished]
    		42. 2000 [HTML]

  42. Evolvability Checkpoints Against Evolutionary Pathologies
    Artificial Life 7, 3-7
    		43. 2000 [PDF] [11 Cites]

  43. Tutorial: Evolutionary Computation Models from Population Genetics:
    Part 2: An Historical Toolbox
    Congress on Evolutionary Computation
    		44. 2000 [PDF] [9 Cites]

  44. Fitness Distance Correlation Analysis: An Instructive Counterexample
    In Proceedings of the Seventh International Conference on Genetic Algorithms, ed. T. Baeck. Morgan Kaufmann, San Mateo, 57-64
    		45. 1997 [PDF] [159 Cites]

  45. NK Fitness Landscapes
    In Handbook of Evolutionary Computation, ed. T. Back, D. Fogel, and Z. Michalewicz. Institute of Physics Press
    		46. 1996 [PDF] [254 Cites]

  46. Complex Adaptations and the Evolution of Evolvability,
    G. P. Wagner and L. Altenberg
    Evolution 50 (3): 967-976
    		47. 1996 [PDF] [2383 Cites] [4.201]

  47. Genome Growth and the Evolution of the Genotype-Phenotype Map
    In Evolution and Biocomputation: Computational Models of Evolution, ed. Wolfgang Banzhaf and Frank H. Eeckman. Lecture Notes in Computer Science vol. 899. Springer-Verlag, pp. 205-259
    		48. 1995 [PDF] [219 Cites]

  48. The Schema Theorem and Price’s Theorem
    In Foundations of Genetic Algorithms 3, ed. Darrell Whitley and Michael Vose. Morgan Kaufmann, San Francisco, pp. 23-49
    		49. 1995 [PDF] [387 Cites]

  49. Evolving Better Representations through Selective Genome Growth
    Proceedings of the IEEE World Congress on Computational Intelligence, pp. 182-187
    		50. 1994 [PDF] [152 Cites]

  50. Emergent Phenomena in Genetic Programming
    In Proceedings of the Third Annual Conference on Evolutionary Programming, ed. Anthony V. Sebald and Lawrence J. Fogel. World Scientific, pp. 233-241
    		51. 1994 [PDF] [108 Cites]

  51. The Evolution of Evolvability in Genetic Programming
    Chapter 3 in Advances in Genetic Programming, ed. Kenneth Kinnear. MIT Press, pp. 47-74
    		52. 1994 [PDF] [564 Cites]

  52. Chaos from Linear Frequency-Dependent Selection
    American Naturalist 138: 51-68
    		53. 1991 [PDF] [66 Cites] [4.167]

  53. Maternal terminology
    Scientific Correspondence, Nature 331: 309 (28 January 1988)
    		54. 1988 [HTML] [36.28]

  54. Selection, generalized transmission and the evolution of modifier genes.
    I. The reduction principle     ,
    L. Altenberg and M. W. Feldman
    Genetics 117: 559-572
    		55. 1987 [PDF] [118 Cites] [5.963]

  55. Selection for increased mutation rates with fertility differences between matings ,
    K Holsinger, M. W. Feldman, and L. Altenberg
    Genetics 112: 909-922
    		56. 1986 [PDF] [26 Cites] [5.963]

  56. Selection for Modularity in the Genome ,
    L. Altenberg and D. L. Brutlag
    Cited in: Doolittle, W.F. 1987. The Origin and Function of Intervening Sequences in DNA: A Review. American Naturalist 130: 915-928; and Doolittle, W.F. 1987. What Introns Have to Tell Us: Hierarchy in Genome Evolution. Cold Spring Harb Symp Quant Biol 52: 907-913
    		57. 1986 [PDF] [5 Cites]

  57. Knowledge Representation in the Genome: New Genes, Exons, and Pleiotropy
    Genetics 110: supplement, s41
    		58. 1985 [HTML] [5.963]

  58. Statistical inference on measures of niche overlap ,
    L. D. Mueller and L. Altenberg
    Ecology 66: 1204-1210
    		59. 1985 [PDF] [112 Cites] [4.849]

  59. A Generalization of Theory on the Evolution of Modifier Genes,
    Ph.D. Dissertation, Stanford University. University Microfilms International, Ann Arbor
    		60. 1984 [PDF] [26 Cites]

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