@inproceedings{Marggraff:Altenberg:and:Parsons:2017:GravityGames,
title={Gravity{G}ames---{The} First Game Invented by STEM and Design Students is Made in Space on the 0G 3D Printer Aboard the International Space Station and Demoed by the Crew},
author={Marggraff, MJ and Ray Altenberg and Colin Parsons},
booktitle={AIAA SPACE and Astronautics Forum and Exposition},
pages={5245},
year={2017},
COMMENT="Ray Altenberg"
}
@ARTICLE{Altenberg:1983:FBB,
AUTHOR = "Altenberg, Lee",
YEAR = 1983,
TITLE = "From the Bedroom to the {B}omb: An Interview with {P}aul {E}hrlich",
JOURNAL = "Stanford Daily",
MONTH = "April 1"}
@UNPUBLISHED{Altenberg:1983:LTN,
AUTHOR = "Lee Altenberg",
title = "Exon shuffling: A prediction of an excess of 0mod3 lengths for exons",
note = "Letter to {\it Nature}. Unpublished.",
year = "1983"
}
@PHDTHESIS{Altenberg:1984,
AUTHOR = "Lee Altenberg",
YEAR = 1984,
MONTH="October",
TITLE = "A Generalization of Theory on the Evolution of Modifier Genes",
SCHOOL = "Stanford University",
TYPE = "{Ph.D.} dissertation"
}
@PHDTHESIS{Altenberg:1984:UMI,
AUTHOR = "Lee Altenberg",
YEAR = 1984,
MONTH="October",
TITLE = "A Generalization of Theory on the Evolution of Modifier Genes",
SCHOOL = "Stanford University",
TYPE = "{Ph.D.} dissertation",
PUBLISHER="ProQuest",
ADDRESS="Ann Arbor, Michigan",
NOTE = "\url{http://search.proquest.com/docview/303425436/abstract}",
PAGES="{ProQuest document ID: 303425436}",
COMMENT = "\url{http://proquest.umi.com/pqdlink?did=752203331&sid=2&Fmt=2&RQT=309}{ProQuest document ID: 752203331}"
}
@BOOK{Altenberg:1984:Book,
AUTHOR = "Lee Altenberg",
YEAR = 1984,
MONTH="October",
TITLE = "A Generalization of Theory on the Evolution of Modifier Genes",
SCHOOL = "Stanford University",
TYPE = "{Ph.D.} dissertation",
PUBLISHER="ProQuest",
ADDRESS="Ann Arbor, Michigan",
NOTE = "\url{http://search.proquest.com/docview/303425436/abstract}",
PAGES="{ProQuest document ID: 303425436}",
COMMENT = "\url{http://proquest.umi.com/pqdlink?did=752203331&sid=2&Fmt=2&RQT=309}{ProQuest document ID: 752203331}"
}
@PHDTHESIS{Altenberg:1984:Citeseerx,
AUTHOR = "Lee Altenberg",
YEAR = 1984,
MONTH="October",
TITLE = "A Generalization of Theory on the Evolution of Modifier Genes",
SCHOOL = "Stanford University",
TYPE = "{Ph.D.} dissertation",
PUBLISHER="CiteSeer",
NOTE = "\url{http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.187.5507}"
}
@PHDTHESIS{Altenberg:1984:dyna,
AUTHOR = "Lee Altenberg",
YEAR = 1984,
MONTH="October",
TITLE = "A Generalization of Theory on the Evolution of Modifier Genes",
SCHOOL = "Stanford University",
TYPE = "{Ph.D.} dissertation",
PUBLISHER="Lee Altenberg",
NOTE = "\url{http://dynamics.org/Altenberg/FILES/Altenberg_PhD.1984.pdf}"
}
@UNPUBLISHED{Altenberg:1984:Lockout,
AUTHOR = "Lee Altenberg",
YEAR = "1984",
TITLE = "Locking-out Prisoner's Dilemma Genes",
NOTE = "Research Notes, {\it Evolutionary Lock Out}, 1984"
}
@UNPUBLISHED{Altenberg:1984:GroupSelection,
AUTHOR = "Lee Altenberg",
YEAR = "1984",
TITLE = "Group Selection Model for limitation of group disadvantageous mutation",
NOTE = "Research Notes, {\it Evolutionary Lock Out}, entry August 4, 1984"
}
@ARTICLE{Altenberg:1985,
AUTHOR = "Altenberg, Lee",
YEAR = "1985",
TITLE = "Knowledge representation in the genome: new genes,
exons, and pleiotropy",
JOURNAL = "Genetics",
VOLUME = "110, supplement",
NOTE = "Abstract of paper presented at the 1985 Meeting of the Genetics Society of America",
PAGES = "s41"}
@ARTICLE{Mueller:and:Altenberg:1985,
AUTHOR = "Mueller, L. and L. Altenberg",
YEAR = 1985,
TITLE = "Statistical inference on Measures of Niche Overlap",
JOURNAL = "Ecology",
VOLUME = 66,
PAGES = "1204-1210"
}
@ARTICLE{Holsinger:Feldman:and:Altenberg:1986,
AUTHOR = "Kent Holsinger and Marcus W. Feldman and Lee Altenberg",
YEAR = 1986,
TITLE = "Selection for Increased Mutation Rates with Fertility Differences Between Matings",
JOURNAL = "Genetics",
VOLUME = 112,
PAGES = "909-922"
}
@ARTICLE{Holsinger:etal:1986:Selection,
AUTHOR = "Kent Holsinger and Marcus W. Feldman and Lee Altenberg",
YEAR = 1986,
TITLE = "Selection for Increased Mutation Rates with Fertility Differences Between Matings",
JOURNAL = "Genetics",
VOLUME = 112,
PAGES = "909-922"
}
@UNPUBLISHED{Altenberg:and:Brutlag:1986,
author = {Lee Altenberg and Douglas Lee Brutlag},
title = {Selection for Modularity in the Genome},
year = {1986},
URL="http://citeseer.ist.psu.edu/viewdoc/summary?doi=10.1.1.33.1489",
DOI="10.1.1.33.1489",
NOTE = "Unpublished. Cited in \cite{Doolittle:1987:What}, \cite{Doolittle:1987:Origin} and \cite{Tomita:Shimizu:and:Brutlag:1996}",
COMMENT="title was = Selection for Modularity in the Genome: Reading Frame Evidence for Exon Shuffling"
}
@ARTICLE{Altenberg:and:Feldman:1987,
AUTHOR = "Lee Altenberg and Marcus W. Feldman",
YEAR = "1987",
TITLE = "Selection, generalized transmission, and the evolution of modifier genes. {I}. {T}he reduction principle",
JOURNAL = "Genetics",
VOLUME = "117",
PAGES = "559--572"}
@ARTICLE{Altenberg:1988,
AUTHOR = "Altenberg, Lee",
YEAR = 1988,
TITLE = "Maternal Terminology",
NOTE = "Scientific Correspondence",
JOURNAL = "Nature",
VOLUME = 331,
PAGES = 309}
@ARTICLE{Altenberg:1990:ETC,
AUTHOR = "Altenberg, Lee",
YEAR = 1990,
TITLE = "An End to Capitalism: {L}eland {S}tanford's Forgotten Vision",
JOURNAL = "Sandstone and Tile",
VOLUME = 14,
NUMBER = 1,
PAGES = "8-20",
MONTH = "Winter",
PUBLISHER = "Stanford Historical Society",
ADDRESS= "Stanford, California",
NOTE = "Stanford Historical Society, Stanford, CA, \url{http://dynamics.org/Altenberg/PAPERS/BCLSFV/}",
}
@ARTICLE{Altenberg:1990:RBCM,
AUTHOR = "Altenberg, Lee",
YEAR = 1990,
TITLE = "The {R}obber {B}aron and the Co-op Movement: {L}eland {S}tanford's
Forgotten Vision",
JOURNAL = "Worker Co-op (Toronto)",
VOLUME = 10,
NUMBER = 1,
PAGES = "18-22"}
@INPROCEEDINGS{Altenberg:1990:SCEA,
AUTHOR = "Altenberg, Lee",
YEAR = 1990,
TITLE = "Student Co-ops and Ecocity Action",
EDITOR = "C. Canfield",
BOOKTITLE = "Ecocity Conference 1990: Report of the First International Ecocity Conference",
PAGES = "77-78",
ORGANIZATION = "Urban Ecology",
ADDRESS = "Berkeley, CA"}
@ARTICLE{Altenberg:1991,
AUTHOR = "Altenberg, Lee",
YEAR = 1991,
TITLE = "Chaos from Linear Frequency-Dependent Selection",
JOURNAL = "American Naturalist",
VOLUME = 138,
number = {1},
PAGES = "51--68",
URL="https://www.journals.uchicago.edu/doi/pdf/10.1086/285204",
doi = {10.1086/285204},
}
@INCOLLECTION{Altenberg:1994:EEGP,
AUTHOR = "Lee Altenberg",
YEAR = 1994,
TITLE = "The evolution of evolvability in genetic programming",
BOOKTITLE = "Advances in Genetic Programming",
CHAPTER="3",
EDITOR = "Kenneth E. Kinnear",
PUBLISHER = "MIT Press",
ADDRESS = "Cambridge, MA",
PAGES = "47--74",
ISBN="9780262515535",
WIKI="[{{cite book |author1=Lee Altenberg |authorlink1=The evolution of evolvability in genetic programming |editor1-last=Kenneth |editor1-first=Kinnear |title=Advances in Genetic Programming |date=1994 |publisher=MIT Press |location=Cambridge, MA |isbn=9780262515535 |pages=47-74 |url=https://www.santafe.edu/research/results/working-papers/the-evolution-of-evolvability-in-genetic-programmi |archiveurl=https://mitpress.mit.edu/books/advances-genetic-programming-volume-1}}]"
}
@INPROCEEDINGS{Altenberg:1994:EBR,
AUTHOR = "Lee Altenberg",
YEAR = "1994",
PAGES = "182--187",
TITLE = "Evolving better representations through selective genome growth",
BOOKTITLE = "Proceedings of the 1st IEEE Conference on Evolutionary Computation. Part 1 (of 2)",
EDITOR = "",
PUBLISHER = "IEEE",
ADDRESS = "Piscataway N.J.",
URL="https://ieeexplore.ieee.org/document/350019",
WIKI="[{{cite journal |last1=Altenberg |first1=Lee |title=Evolving better representations through selective genome growth |journal=Proceedings of the 1st IEEE Conference on Evolutionary Computation |date=1994 |volume=1 |pages=182-187 |url=https://ieeexplore.ieee.org/document/350019}}]"
}
@INPROCEEDINGS{Altenberg:1994:EPIGP,
AUTHOR = "Lee Altenberg",
YEAR = "1994",
TITLE = "Emergent phenomena in genetic programming",
BOOKTITLE = "Evolutionary Programming --- Proceedings of the Third Annual Conference",
EDITOR = "A.V. Sebald and L.J. Fogel",
PUBLISHER = "World Scientific Publishing",
PAGES = "233--241",
ISBN="9810218109",
URL="https://www.semanticscholar.org/paper/EMERGENT-PHENOMENA-IN-GENETIC-PROGRAMMING-Altenberg/39b97d6a74e71aa3ea178a112f21feb6785f9dad",
WIKI="[{{cite book |last1=Altenberg |first1=Lee |editor1-last=Sebald |editor1-first=A.V. |title=Emergent phenomena in genetic programming |date=1994 |publisher=World Scientific Publishing |isbn=9810218109 |pages=233-241}}]"
}
@INCOLLECTION{Altenberg:1995:STPT,
AUTHOR = "Lee Altenberg",
YEAR = "1995",
TITLE = "The {Schema} {Theorem} and {Price}'s {Theorem}",
BOOKTITLE = "Foundations of Genetic Algorithms 3",
EDITOR = "Darrell Whitley and Michael D. Vose",
PUBLISHER = "Morgan Kaufmann",
ADDRESS = "San Mateo, CA",
PAGES = "23--49"
}
@UNPUBLISHED{Altenberg:and:Feldman:1995:SGTEMG2,
AUTHOR = "Altenberg, Lee and Marcus W. Feldman",
YEAR = "1995",
TITLE = "Selection, generalized transmission, and the evolution of modifier genes. {II}. {M}odifier polymorphisms",
NOTE = "To appear."}
@INCOLLECTION{Altenberg:1995:GGEGPM,
AUTHOR = "Altenberg, Lee",
YEAR = "1995",
TITLE = "Genome growth and the evolution of the genotype-phenotype map",
BOOKTITLE = "Evolution and Biocomputation: Computational Models of Evolution",
EDITOR = "Wolfgang Banzhaf and Frank H. Eeckman",
PUBLISHER = "Springer-Verlag",
ADDRESS = "Berlin",
PAGES = "205--259",
SERIES="Lecture Notes in Computer Science",
VOLUME = "899",
ISBN="978-3-540-49176-7",
ISSN="1611-3349",
WIKI="[{{cite book |last1=Altenberg |first1=L. |authorlink1=Genome Growth and the Evolution of the Genotype-Phenotype Map |editor1-last=Banzhaf,W. and Eeckman, F. H. |editor1-first=W. |editor1-link=Evolution and Biocomputation: Computational Models of Evolution |title=Genome Growth and the Evolution of the Genotype-Phenotype Map |date=1995 |publisher=Springer |location=Berlin |isbn=978-3-540-49176-7 |pages=205-259}}]"
}
@ARTICLE{Wagner:and:Altenberg:1996,
AUTHOR = "Wagner, G{\"{u}}nter P. and Lee Altenberg",
YEAR = "1996",
TITLE = "Complex adaptations and the evolution of evolvability",
JOURNAL = "Evolution",
VOLUME = "50",
NUMBER = 3,
PAGES = "967--976",
WIKI="[{{Cite journal|last=Wagner|first=GŸnter P.|last2=Altenberg|first2=Lee|date=June 1996|journal=Evolution|volume=50|issue=3|pages=967Ð976|doi=10.1111/j.1558-5646.1996.tb02339.x|pmid=28565291|issn=0014-3820|title=Perspective: Complex Adaptations and the Evolution of Evolvability}}]"
}
@ARTICLE{Tomita:Shimizu:and:Brutlag:1996,
AUTHOR = "Tomita, M. and Shimizu, N. and Brutlag, D. L.",
YEAR = 1996,
TITLE = "Introns and Reading Frames: Correlations Between Splice Sites and Their Codon Positions",
JOURNAL = "Molecular Biology and Evolution",
VOLUME = 13,
NUMBER = 9,
PAGES = "1219--1223"
}
@INCOLLECTION{Altenberg:1997:NK,
TITLE={NK Fitness Landscapes},
AUTHOR={Altenberg, Lee},
BOOKTITLE={Handbook of Evolutionary Computation},
PAGES={B2.7:5--B2.7:10},
EDITOR="T. {B\"ack} and D. Fogel and Z. Michalewicz",
YEAR={1997},
PUBLISHER="IOP Publishing Ltd and Oxford University Press"
}
@INCOLLECTION{Altenberg:1997:NKFL,
TITLE={NK Fitness Landscapes},
AUTHOR={Altenberg, Lee},
BOOKTITLE={Handbook of Evolutionary Computation},
PAGES={B2.7:5--B2.7:10},
EDITOR="T. {B\"ack} and D. Fogel and Z. Michalewicz",
YEAR={1997},
PUBLISHER="IOP Publishing Ltd and Oxford University Press"
}
@INCOLLECTION{Altenberg:1997:NKL,
TITLE={NK Landscapes},
AUTHOR={Altenberg, Lee},
BOOKTITLE={Handbook of Evolutionary Computation},
PAGES={B2.7:5--B2.7:10},
EDITOR="T. {B\"ack} and D. Fogel and Z. Michalewicz",
YEAR={1997},
PUBLISHER="IOP Publishing Ltd and Oxford University Press"
}
@INPROCEEDINGS{Altenberg:1997:FDCA,
AUTHOR = "Lee Altenberg",
YEAR = "1997",
PAGES = "57--64",
TITLE = "Fitness Distance Correlation Analysis: An Instructive Counterexample",
BOOKTITLE = "Proceedings of the Seventh International Conference on Genetic Algorithms",
EDITOR = "{B\"{a}ck}, Thomas ",
ADDRESS = "San Mateo, CA",
PUBLISHER = "Morgan Kaufmann"
}
@INPROCEEDINGS{Altenberg:2000:ECAEP,
AUTHOR = "Lee Altenberg",
YEAR = "2000",
PAGES = "",
TITLE = "Evolvability Checkpoints Against Evolutionary Pathologies",
BOOKTITLE = "Proceedings of the Evolvability Workshop at the Artificial Life 7 Conference",
EDITOR = "Chrystopher L. Nehaniv",
ADDRESS = "Portland, OR",
PUBLISHER = "International Society for Artificial Life"
}
@INCOLLECTION{Altenberg:2004:Open,
Title = "Open Problems in the Spectral Analysis of Evolutionary Dynamics",
Author = "Lee Altenberg",
BookTitle = "Frontiers of Evolutionary Computation",
Editor = "Anil Menon",
Series = "Genetic Algorithms And Evolutionary Computation Series",
Volume = "11",
Publisher = "Kluwer Academic Publishers ",
Address = "Boston, MA ",
Year = "2004",
Pages = "73-102"
}
@ARTICLE{Shpak:Stadler:Wagner:and:Altenberg:2004,
TITLE = "Simon-Ando Decomposability and Fitness Landscapes",
JOURNAL = "Theoretical Biosciences",
AUTHOR = "Max Shpak and Peter Stadler and Gunter Wagner and Lee Altenberg",
VOLUME = "123",
PAGES = "139-180",
NOTE = "\url{http://arxiv.org/abs/q-bio.PE/0403030}"
}
@ARTICLE{Altenberg:2005:Evolvability,
author = {Lee Altenberg},
title = {Evolvability Suppression to Stabilize Far-Sighted Adaptations},
journal = {Artificial Life},
volume = {11},
number = {4},
year = {2005},
issn = {1064-5462},
pages = {427--444},
doi = {http://dx.doi.org/10.1162/106454605774270633},
publisher = {MIT Press},
address = {Cambridge, MA, USA},
COMMENT="was ESSFSA"
}
%% was Altenberg:2004:MESLLQ
@INCOLLECTION{Altenberg:2005,
Title = "Modularity in Evolution: Some Low-Level Questions",
Author = "Lee Altenberg",
BookTitle = "Modularity: Understanding the Development and Evolution of Natural Complex Systems",
Editor = "Werner Callebaut and Diego Rasskin-Gutman",
Publisher = "MIT Press ",
Address = "Cambridge, MA ",
Year = "2005",
Pages = "99--128",
ISBN="0-262-03326-7",
URLdata ="http://dynamics.org/Altenberg/FILES/Altenberg_modularity.2005.pdf",
WIKI="[{{cite book |last1=Altenberg |first1=L. |editor1-last=Callebaut, W. and Rasskin-Gutman, D. |editor1-link=Modularity: Understanding the Development and Evolution of Natural Complex Systems |title=Modularity in Evolution: Some Low-Level Questions |date=2005 |publisher=MIT Press |location=Cambridge, MA |isbn=0-262-03326-7 |pages=99-128}}]"
}
@INCOLLECTION{Altenberg:2005:Modularity,
Title = "Modularity in Evolution: Some Low-Level Questions",
Author = "Lee Altenberg",
BookTitle = "Modularity: Understanding the Development and Evolution of Natural Complex Systems",
Editor = "Werner Callebaut and Diego Rasskin-Gutman",
Publisher = "MIT Press ",
Address = "Cambridge, MA ",
Year = "2005",
Pages = "99--128",
ISBN="0-262-03326-7",
URLdata ="http://dynamics.org/Altenberg/FILES/Altenberg_modularity.2005.pdf"
}
@ARTICLE{Altenberg:2008:ERPLVGT,
AUTHOR = "Lee Altenberg",
YEAR = "2008",
TITLE = "The Evolutionary Reduction Principle for Linear Variation in Genetic Transmission",
JOURNAL = "arXiv.org",
URLdata="http://arxiv.org/abs/0806.2181",
VOLUME = "q-bio",
PAGES = ""
}
@ARTICLE{Altenberg:2009:Linear,
AUTHOR = "Lee Altenberg",
YEAR = "2009",
TITLE = "The Evolutionary Reduction Principle for Linear Variation in Genetic Transmission",
JOURNAL = "Bulletin of Mathematical Biology",
VOLUME = "71",
NUMBER = 5,
PAGES = "1264--1284",
DOI = "10.1007/s11538-009-9401-2",
COMMENT="was Altenberg:2009:ERPLVGT"
}
@UNPUBLISHED{Altenberg:2008:Convexity,
AUTHOR = "Lee Altenberg",
YEAR = "2008",
TITLE = "Convexity of the Spectral Abscissa Over Some Spaces of Matrix Variation"
}
@ARTICLE{Altenberg:2009:Mutation,
AUTHOR = "Lee Altenberg",
YEAR = "2009",
TITLE = "Evolutionary Reduction of Mutation Rates in a Multivariate, Multilocus Model",
JOURNAL = "arXiv.org",
URL="http://www.arxiv.com/abs/0909.2454v1",
VOLUME="\url{http://www.arxiv.com/abs/0909.2454v1}",
NUMBER="",
PAGES="",
archivePrefix = "arXiv",
eprint = "0909.2454v1",
primaryClass = "q-bio",
COMMENT="was Altenberg:2009:ERMRMMM, 14 Sep 2009"
}
@ARTICLE{Altenberg:2010:Feldman-Karlin,
AUTHOR = "Lee Altenberg",
YEAR = "2010",
TITLE = "Proof of the {F}eldman-{K}arlin Conjecture on the Maximum Number of Equilibria in an Evolutionary System",
JOURNAL = "Theoretical Population Biology",
VOLUME = "77",
NUMBER=4,
DATE = "June",
PAGES = "263--269",
URLdata="http://arxiv.org/abs/0910.1892",
archivePrefix = "arXiv",
eprint = "0910.1892",
primaryClass = "q-bio"
}
@article{Altenberg:2010:Karlin,
TITLE = "Karlin Theory On Growth and Mixing Extended to Linear Differential Equations",
author={Altenberg, Lee},
journal={arXiv preprint arXiv:1006.3147},
year={2010}
}
@TECHREPORT{Altenberg:2010:arXiv:Karlin,
AUTHOR = "Lee Altenberg",
YEAR = "2010",
TITLE = "Karlin Theory On Growth and Mixing Extended to Linear Differential Equations",
JOURNAL = "arXiv.org",
INSTITUTION = "arXiv.org",
NOTE = "\url{http://arxiv.org/abs/1006.3147} {http://arxiv.org/abs/1006.3147}",
NUMBER="",
DATE = "",
PAGES = "",
archivePrefix = "arXiv",
eprint = "1006.3147",
primaryClass = "math"
}
@ARTICLE{Altenberg:2011:Mutation,
AUTHOR = "Lee Altenberg",
YEAR = "2011",
TITLE = "An Evolutionary Reduction Principle for Mutation Rates at Multiple Loci",
JOURNAL = "Bulletin of Mathematical Biology",
VOLUME = "73",
PAGES = "1227--1270"
}
@TECHREPORT{Altenberg:2011:arXiv:Dispersal,
AUTHOR = "Lee Altenberg",
YEAR = "2011",
TITLE ={The Evolution of Dispersal in Random Environments and The Principle of Partial Control},
JOURNAL = "arXiv.org",
INSTITUTION = "arXiv.org",
TYPE = {Preprint},
NOTE = "\url{http://arxiv.org/abs/1106.4388}",
NUMBER="",
DATE = "",
PAGES = "",
archivePrefix = "arXiv",
eprint = "1106.4388",
primaryClass = "math"
}
@TECHREPORT{Altenberg:2011:arXiv:Resolvent-Positive,
AUTHOR = "Lee Altenberg",
YEAR = "2011",
TITLE ={Resolvent Positive Linear Operators Exhibit the Reduction Phenomenon},
JOURNAL = "arXiv.org",
INSTITUTION = "arXiv.org",
TYPE = {Preprint},
archivePrefix = "arXiv",
eprint = "1108.4546",
primaryClass = "math",
URL="{http://arxiv.org/abs/1108.4546}",
NOTE = "\url{http://arxiv.org/abs/1108.4546}"
}
@TECHREPORT{Altenberg:2011:Resolvent-Positive,
AUTHOR = "Lee Altenberg",
YEAR = "2011",
TITLE ={Resolvent Positive Linear Operators Exhibit the Reduction Phenomenon},
JOURNAL = "arXiv.org",
INSTITUTION = "arXiv.org",
TYPE = {Preprint},
archivePrefix = "arXiv",
eprint = "1108.4546",
primaryClass = "math",
URL="{http://arxiv.org/abs/1108.4546}",
NOTE = "Preprint, \url{http://arxiv.org/abs/1108.4546} {http://arxiv.org/abs/1108.4546}"
}
@ARTICLE{Altenberg:2012:Resolvent,
AUTHOR = "Lee Altenberg",
YEAR = "2012",
TITLE ={Resolvent Positive Linear Operators Exhibit the Reduction Phenomenon},
JOURNAL = "Proceedings of the National Academy of Sciences U.S.A.",
VOLUME="109",
NUMBER="10",
PAGES="3705--3710",
URL="www.pnas.org/cgi/doi/10.1073/pnas.1113833109",
COMMENT = "\url{www.pnas.org/cgi/doi/10.1073/pnas.1113833109}{www.pnas.org/cgi/doi/10.1073/pnas.1113833109}",
COMMENT="Was Altenberg:2012:Resolvent-positive"
}
@ARTICLE{Altenberg:2012:Dispersal,
AUTHOR = "Lee Altenberg",
YEAR = "2012",
TITLE ={The Evolution of Dispersal in Random Environments and The Principle of Partial Control},
JOURNAL = "Ecological Monographs",
VOLUME = "82",
NUMBER="3",
PAGES = "297--333"
}
@article{Altenberg:2013:Sharpened,
AUTHOR = "Lee Altenberg",
title = "A sharpened condition for strict log-convexity of the spectral radius via the bipartite graph",
journal = "Linear Algebra and Its Applications",
volume = "438",
number = "9",
pages = "3702 - 3718",
year = "2013",
COMMENT = "Preprint, \url{http://arxiv.org/abs/1208.1036} {http://arxiv.org/abs/1208.1036}",
issn = "0024-3795",
doi = "10.1016/j.laa.2013.01.008",
url = "http://www.sciencedirect.com/science/article/pii/S0024379513000578",
keywords = "Two-fold irreducible",
keywords = "Strict convexity",
keywords = "Superconvexity",
keywords = "Sign pattern",
keywords = "Chainable matrix",
keywords = "Primitive matrix"
}
@ARTICLE{Altenberg:2012:Principle,
AUTHOR = "Lee Altenberg",
YEAR = "2012",
JOURNAL="Under review",
TITLE = {The Principle of Partial Control in Reaction-Diffusion Models for the Evolution of Dispersal},
COMMENT = "href=http://dynamics.org/Altenberg/FILES/Altenberg_AIMS_Paper_2012.pdf"
}
@ARTICLE{Altenberg:2013:A2D,
AUTHOR = "Lee Altenberg",
YEAR = "2013",
COMMENT ="Submitted January 2013",
TITLE="On the Ordering of Spectral Radius Product {$r(\A) \ r(\A\D)$} Versus {$r(\A^2 \D)$} and Related Applications",
JOURNAL = "SIAM Journal on Matrix Analysis and Applications",
URL="http://arxiv.org/abs/1301.4969",
VOLUME="34",
NUMBER="3",
PAGES="978--998",
DOI="doi: 10.1137/130906179",
archivePrefix = "arXiv",
eprint = "1301.4969",
primaryClass = "math.SP"
}
@ARTICLE{Altenberg:2013:Cosmological,
AUTHOR = "Lee Altenberg",
YEAR = "2013",
TITLE = {Implications of the Reduction Principal for Cosmological Natural Selection},
JOURNAL = "arXiv.org",
URL="http://arxiv.org/abs/1302.1293",
VOLUME="\url{http://arxiv.org/abs/1302.1293}",
NUMBER="",
PAGES="",
archivePrefix = "arXiv",
eprint = "1302.1293",
primaryClass = "gr-qc"
}
@article{Altenberg:2014:Mathematics,
year={2014},
issn={1389-2576},
journal={Genetic Programming and Evolvable Machines},
doi={10.1007/s10710-013-9198-5},
title={Mathematics awaits: {C}ommentary on ``{G}enetic {P}rogramming and {E}mergence'' by {W}olfgang {B}anzhaf},
url={http://dx.doi.org/10.1007/s10710-013-9198-5},
publisher={Springer US},
keywords={Evolvability; Robustness; Subtree exchange; Mathematics; Matrix theory; Lagrange distribution},
author={Altenberg, Lee},
VOLUME=15,
NUMBER=1,
pages={87--89},
language={English}
}
@article{Altenberg:2014:Evolvability,
author={Altenberg, Lee},
year={2014},
issn={1389-2576},
journal={Genetic Programming and Evolvable Machines},
volume={15},
number={3},
pages={275-280},
doi={10.1007/s10710-014-9223-3},
title={Evolvability and robustness in artificial evolving systems: {T}hree perturbations},
url={http://dx.doi.org/10.1007/s10710-014-9223-3},
publisher={Springer US},
language={English}
}
@ARTICLE{Altenberg:2014:Measuring,
AUTHOR = "Lee Altenberg",
YEAR = "2014",
TITLE = {Measuring Theoreticians},
JOURNAL = "To be submitted",
VOLUME="",
PAGES="",
}
@ARTICLE{Altenberg:2015:Statistical,
AUTHOR = "Lee Altenberg",
YEAR = "2015",
TITLE = {Statistical Problems in a Paper on Variation In Cancer Risk Among Tissues, and New Discoveries},
JOURNAL = "arXiv preprint",
VOLUME="\url{http://arxiv.org/abs/1501.04605}",
PAGES="arXiv:1501.04605",
URL="http://arxiv.org/abs/1501.04605",
archivePrefix = "arXiv",
eprint = "1501.04605",
primaryClass = "q-bio.QM"
}
@ARTICLE{Altenberg:2015:Mathematical,
AUTHOR = "Lee Altenberg",
YEAR = "2015",
TITLE = {Mathematical Misconceptions Invalidate the Bad Prognosis for Prevention},
JOURNAL = "TBA",
URL="",
VOLUME="",
NUMBER="",
PAGES=""
}
@article{Altenberg:2015:Fundamental:arXiv,
year={2015},
title={Fundamental Properties of the Evolution of Mutational Robustness},
author={Altenberg, Lee},
journal={arXiv preprint arXiv:1508.07866},
volume = {abs/1508.07866},
url = {http://arxiv.org/abs/1508.07866},
archivePrefix = {arXiv},
eprint = {1508.07866},
}
@ARTICLE{Altenberg:2015:Spectral,
AUTHOR = "Lee Altenberg",
TITLE="Spectral Landscape Theory: {S}ome Color from Infinite Population
Analysis",
journal = {Dagstuhl Reports: {Theory of Evolutionary Algorithms (Dagstuhl Seminar 15211)}},
volume = {5},
number = {5},
PAGES="61",
editor = {Benjamin Doerr and Nikolaus Hansen and Christian Igel and Lothar Thiele},
ISSUE = {{Theory of Evolutionary Algorithms (Dagstuhl Seminar 15211)}},
ISSN = {2192-5283},
year = {2015},
publisher = {Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik},
address = {Dagstuhl, Germany},
URL = {http://drops.dagstuhl.de/opus/volltexte/2016/5402},
URN = {urn:nbn:de:0030-drops-54022},
doi = {http://dx.doi.org/10.4230/DagRep.5.5.57},
}
@ARTICLE{Altenberg:2016:Norm,
AUTHOR = "Lee Altenberg",
YEAR=2016,
TITLE={Norm Statement Considered Harmful: {C}omment on ``{E}volution of {U}nconditional {D}ispersal in {P}eriodic {E}nvironments''},
JOURNAL="Journal of Biological Dynamics",
VOLUME="10",
NUMBER="1",
PAGES="342--346"
}
@INCOLLECTION{Altenberg:2016:EC,
AUTHOR = "Lee Altenberg",
YEAR = "2016",
TITLE = {Evolutionary Computation},
BOOKTITLE="The Encyclopedia of Evolutionary Biology",
EDITOR="Kliman, Richard M.",
VOLUME=2,
PAGES="40--47",
PUBLISHER="Academic Press",
ADDRESS="Oxford",
ISBN="978-0-12-800426-5"
}
@article{Altenberg:2017:Probing,
author={Altenberg, Lee},
year={2017},
title={Probing the axioms of evolutionary algorithm design: Commentary on ``On the mapping of genotype to phenotype in evolutionary algorithms'' by Peter A. Whigham, Grant Dick, and James Maclaurin},
journal={Genetic Programming and Evolvable Machines},
pages={1--5},
publisher={Springer}
}
@INPROCEEDINGS{Altenberg:2017:Genetic,
AUTHOR="Lee Altenberg",
YEAR=2017,
TITLE="Genetic Information, Mutation Rates, and the Lore of the Error Threshold",
PAGES="223--230",
BOOKTITLE="Proceedings of the 9th International Conference on Bioinformatics and Computational Biology (BICOB 2017)",
Editors="Oliver Eulenstein and Qin Ding and Hisham Al-Mubaid",
DEDICATION="Dedicated to the memory of my mother, Elizabeth Lee (1929Ð
2016)",
ISBN="978-1-943436-07-1",
PUBLISHER="The International Society for Computers and Their Applications (ISCA)",
ADDRESS="Winona, MN, USA"
}
@article{Altenberg:Liberman:and:Feldman:2017:Unified,
author={Altenberg, Lee and Liberman, Uri and Feldman, Marcus W},
year={2017},
title={Unified reduction principle for the evolution of mutation, migration, and recombination},
journal={Proceedings of the National Academy of Sciences U.S.A.},
pages={201619655},
elocation-id = {201619655},
doi = {10.1073/pnas.1619655114},
publisher={National Academy of Sciences},
issn = {0027-8424},
URL = {https://www.pnas.org/content/early/2017/03/03/1619655114},
eprint = {https://www.pnas.org/content/early/2017/03/03/1619655114.full.pdf},
COMMENT="Online March 6, 2017"
}
@ARTICLE{Ram:Altenberg:etal:2018:Generation,
AUTHOR = "Yoav Ram and Altenberg, Lee and Liberman, Uri and Feldman, Marcus W",
YEAR= 2018,
TITLE="Generation of Variation and a Modified Mean Fitness Principle: {Necessity} is the Mother of Genetic Invention",
JOURNAL="Theoretical Population Biology",
VOLUME="123",
PAGES="1-8",
COMMENT ="\url{https://www.sciencedirect.com/science/article/pii/S0040580918300200}",
COMMENT="\url{https://www.biorxiv.org/content/early/2017/12/05/229351}"
}
@article{Altenberg:etal:2018:Feldman,
author = "Lee Altenberg and Nicole Creanza and Laurel Fogarty and Lilach Hadany and Oren Kolodny and Kevin N. Laland and Laurent Lehmann and Sarah P. Otto and Noah A. Rosenberg and Jeremy Van Cleve and John Wakeley",
year = "2018",
title = "Some topics in theoretical population genetics: {Editorial} commentaries on a selection of {Marc} {Feldman's} {TPB} papers",
journal = "Theoretical Population Biology",
issn = "0040-5809",
doi = "https://doi.org/10.1016/j.tpb.2018.10.003",
url = "http://www.sciencedirect.com/science/article/pii/S0040580918300303",
}
@article{Lehman:etal:2018:Surprising,
author = {Joel Lehman and
Jeff Clune and
Dusan Misevic and
Christoph Adami and
Lee Altenberg and
Julie Beaulieu and
Peter J. Bentley and
Samuel Bernard and
Guillaume Beslon and
David M. Bryson and
Patryk Chrabaszcz and
Nick Cheney and
Antoine Cully and
St{\'{e}}phane Doncieux and
Fred C. Dyer and
Kai Olav Ellefsen and
Robert Feldt and
Stephan Fischer and
Stephanie Forrest and
Antoine Fr{\'{e}}noy and
Christian Gagn{\'{e}} and
Leni K. Le Goff and
Laura M. Grabowski and
Babak Hodjat and
Frank Hutter and
Laurent Keller and
Carole Knibbe and
Peter Krcah and
Richard E. Lenski and
Hod Lipson and
Robert MacCurdy and
Carlos Maestre and
Risto Miikkulainen and
Sara Mitri and
David E. Moriarty and
Jean{-}Baptiste Mouret and
Anh Nguyen and
Charles Ofria and
Marc Parizeau and
David P. Parsons and
Robert T. Pennock and
William F. Punch and
Thomas S. Ray and
Marc Schoenauer and
Eric Shulte and
Karl Sims and
Kenneth O. Stanley and
Fran{\c{c}}ois Taddei and
Danesh Tarapore and
Simon Thibault and
Westley Weimer and
Richard Watson and
Jason Yosinksi},
title = {The Surprising Creativity of Digital Evolution: {A} Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities},
journal = {CoRR},
volume = {abs/1803.03453},
year = {2018},
url = {http://arxiv.org/abs/1803.03453},
archivePrefix = {arXiv},
eprint = {1803.03453},
timestamp = {Fri, 08 Feb 2019 06:32:16 +0100},
biburl = {https://dblp.org/rec/bib/journals/corr/abs-1803-03453},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{Stopnitzky:etal:2018:arXiv:Physical,
title={Physical limitations of work extraction from temporal correlations},
author={Stopnitzky, Elan and Still, Susanne and Ouldridge, Thomas E and Altenberg, Lee},
journal={arXiv preprint arXiv:1808.06908},
year={2018},
url = {http://arxiv.org/abs/1808.06908},
archivePrefix = {arXiv},
eprint = {1808.06908},
}
@incollection{Stopnitzky:etal:2018:SFI:Physical,
title={Physical limitations of work extraction from temporal correlations},
author={Stopnitzky, Elan and Still, Susanne and Ouldridge, Thomas E. and Altenberg, Lee},
BOOKTITLE="The Energetics of Computing in Life and Machines",
EDITOR="David H. Wolpert and and Chris Kempes and Peter F. Stadler and Joshua A. Grochow",
PUBLISHER="Santa Fe Institute Press",
year={2019},
ISBN="978-1-947864-07-8",
COMMENT="Orig: The Interplay of Thermodynamics and Computation in Natural and Artificial Systems"
}
@article{Stopnitzky:etal:2018:PRE:Physical,
title={Physical limitations of work extraction from temporal correlations},
author={Stopnitzky, Elan and Still, Susanne and Ouldridge, Thomas E and Altenberg, Lee},
journal={Physical Review {E}},
year={2019},
volume={99},
number={4},
pages={042115},
year={2019},
publisher={APS}
}
@ARTICLE{Hordijk:and:Altenberg:2019,
TITLE="Developmental Structuring of Phenotypic Variation: {A} Case Study with a Cellular Automata Model of Ontogeny",
YEAR=2020,
AUTHOR="Wim Hordijk and Lee Altenberg",
journal = {Evolution \& Development},
volume = {22},
NUMBER="1",
pages = {20--34},
doi = {10.1111/ede.12315},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ede.12315},
eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/ede.12315},
}
@ARTICLE{Liberman:Ram:Altenberg:and:Feldman:2019:FDS,
AUTHOR="Uri Liberman and Yoav Ram and Lee Altenberg and Marcus W. Feldman",
TITLE="The Evolution of Frequency-Dependent Cultural Transmission",
YEAR=2019,
JOURNAL="Theoretical Population Biology",
VOLUME="in press",
NUMBER="",
PAGES="",
URL="https://www.sciencedirect.com/science/article/pii/S0040580919302035",
DOI="https://doi.org/10.1016/j.tpb.2019.12.004"
}
@TECHREPORT{Conte:etal:2019:Thermodynamic,
title={Thermodynamic Computing: {A} Report Based On A {CCC} Workshop Held On January 3-5, 2019},
author={Tom Conte and Erik DeBenedictis and Natesh Ganesh and Todd Hylton and Susanne Still and John Paul Strachan and R. Stanley Williams and Alexander Alemi and Lee Altenberg and Gavin Crooks and James Crutchfield and Lidia del Rio and Josh Deutsch and Michael DeWeese and Khari Douglas and Massimiliano Esposito and Michael Frank and Robert Fry and Peter Harsha and Mark Hill and Christopher Kello and Jeff Krichmar and Suhas Kumar and Shih-Chii Liu and Seth Lloyd and Matteo Marsili and Ilya Nemenman and Alex Nugent and Norman Packard and Dana Randall and Peter Sadowski and Narayana Santhanam and Robert Shaw and Adam Stieg and Elan Stopnitzky and Christof Teuscher and Chris Watkins and David Wolpert and Joshua Yang and Yan Yufik},
year={2019},
PUBLISHER="Computing Community Consortium",
eprint={1911.01968},
archivePrefix={arXiv},
primaryClass={cs.CY},
ADDRESS="Washington, D.C."
}
@ARTICLE{Altenberg:2019:Rayleigh,
AUTHOR = "Lee Altenberg",
YEAR = "2019",
TITLE = "An Extension of the Rayleigh Quotient to the Spectral Radius of Asymmetric Nonnegative Matrices",
JOURNAL = "arXiv.org",
URLdata="https://arxiv.org/abs/1912.12771",
VOLUME = "math",
PAGES = ""
}
@article{Lehman2020surprising,
title={The surprising creativity of digital evolution: A collection of anecdotes from the evolutionary computation and artificial life research communities},
author= {Joel Lehman and
Jeff Clune and
Dusan Misevic and
Christoph Adami and
Lee Altenberg and
Julie Beaulieu and
Peter J. Bentley and
Samuel Bernard and
Guillaume Beslon and
David M. Bryson and
Patryk Chrabaszcz and
Nick Cheney and
Antoine Cully and
St{\'{e}}phane Doncieux and
Fred C. Dyer and
Kai Olav Ellefsen and
Robert Feldt and
Stephan Fischer and
Stephanie Forrest and
Antoine Fr{\'{e}}noy and
Christian Gagn{\'{e}} and
Leni K. Le Goff and
Laura M. Grabowski and
Babak Hodjat and
Frank Hutter and
Laurent Keller and
Carole Knibbe and
Peter Krcah and
Richard E. Lenski and
Hod Lipson and
Robert MacCurdy and
Carlos Maestre and
Risto Miikkulainen and
Sara Mitri and
David E. Moriarty and
Jean{-}Baptiste Mouret and
Anh Nguyen and
Charles Ofria and
Marc Parizeau and
David P. Parsons and
Robert T. Pennock and
William F. Punch and
Thomas S. Ray and
Marc Schoenauer and
Eric Shulte and
Karl Sims and
Kenneth O. Stanley and
Fran{\c{c}}ois Taddei and
Danesh Tarapore and
Simon Thibault and
Westley Weimer and
Richard Watson and
Jason Yosinksi},
journal={Artificial Life},
volume={26},
number={2},
pages={274--306},
year={2020},
publisher={MIT Press},
URL="https://www.mitpressjournals.org/doi/full/10.1162/artl_a_00319"
}